Release 1.2 of PAM contains bug fixes to many modules and some new features:
New features:
* FCSFit:
* Added new "Save session" function that allows to save the analysis state including fitted parameters, selected model, loaded files and visualization state.
* The name and description of the loaded model is now shown in the GUI.
* TauFit:
* Added option to fit the instrument response function to a gamma-distribution
Improvements and bugfixes:
* PAM:
* Bugfix to CalculateImage routine for Start/Stop type data
* Image display now uses kHz for intensity.
* Mean arrival time image displays in nanoseconds when 'Use time in ns' is checked
* Export to PhotonHDF
* Updated for use with version 0.5dev of PhotonHDF file format
* Added option to export non-polarization FRET data to PhotonHDF
* Fixed error on saving when using filename with spaces
* Added option to extract raw FRET efficiency trace from intensity traces
* BurstBrowser:
* Option to hide the sum of all population in multiselection mode
* Fixed calculation of three-color static FRET line
* Reworked the way the species list works:
* Top level species (filenames) can not be selected any more
* The "Add species" button will now add a species on the same level as the selected species (previously, it would add a child species)
* To remove a loaded file, a new entry in the right-click menu is available
* Figure export
* Bugfixes to figure export to .eps files
* Added option to export to .fig file
* Gaussian fitting
* Fixed an issue where LSQ fitting was not working when different number of bins were selected for x- and y-dimension
* PDAFit:
* Changed the look of exported plots
* Exporting fit results now saves the parameters for every loaded file individually
* Fixed Angstrom symbol not being displayed in distance distribution plots
* Added mex files for maximum likelihood estimator based PDA
* Added code for Metropolis-Hastings type sampling of confidence intervals
* Fixed numerous bugs for error estimation:
* Now works over multiple files
* Now works for global fitting
* Fixed an issue where, when the "sigma at fraction of R" parameter was used as a fit parameter, it was not globally optimized over all loaded files
* Histograms are now area-normalized in the All-tab
* MIA:
* Fixed bug that occurred when not correlating all frames
* FCSFit:
* Fixed bug when reading in FRET efficiency histograms from BurstBrowser
* TauFit:
* Added option to set x-scale to log
* Custom read-ins:
* Bugfix to Leuven_PTU read-in routine
* Sim:
* Fixed FRET calculation in camera simulations
* Added option to input concentration of particles (linked to particle number and box size)
* ParticleDetection:
* Added frame-wise particle tracking