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v1.3 Release: v1.3
This update brings a lot of bugfixes that we have gathered over the past year and adds a number of new features for the different modules.
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v1.2 Release: v1.2
Release 1.2 of PAM contains bug fixes to many modules and some new features: New features: * FCSFit: * Added new "Save session" function that allows to save the analysis state including fitted parameters, selected model, loaded files and visualization state. * The name and description of the loaded model is now shown in the GUI. * TauFit: * Added option to fit the instrument response function to a gamma-distribution Improvements and bugfixes: * PAM: * Bugfix to CalculateImage routine for Start/Stop type data * Image display now uses kHz for intensity. * Mean arrival time image displays in nanoseconds when 'Use time in ns' is checked * Export to PhotonHDF * Updated for use with version 0.5dev of PhotonHDF file format * Added option to export non-polarization FRET data to PhotonHDF * Fixed error on saving when using filename with spaces * Added option to extract raw FRET efficiency trace from intensity traces * BurstBrowser: * Option to hide the sum of all population in multiselection mode * Fixed calculation of three-color static FRET line * Reworked the way the species list works: * Top level species (filenames) can not be selected any more * The "Add species" button will now add a species on the same level as the selected species (previously, it would add a child species) * To remove a loaded file, a new entry in the right-click menu is available * Figure export * Bugfixes to figure export to .eps files * Added option to export to .fig file * Gaussian fitting * Fixed an issue where LSQ fitting was not working when different number of bins were selected for x- and y-dimension * PDAFit: * Changed the look of exported plots * Exporting fit results now saves the parameters for every loaded file individually * Fixed Angstrom symbol not being displayed in distance distribution plots * Added mex files for maximum likelihood estimator based PDA * Added code for Metropolis-Hastings type sampling of confidence intervals * Fixed numerous bugs for error estimation: * Now works over multiple files * Now works for global fitting * Fixed an issue where, when the "sigma at fraction of R" parameter was used as a fit parameter, it was not globally optimized over all loaded files * Histograms are now area-normalized in the All-tab * MIA: * Fixed bug that occurred when not correlating all frames * FCSFit: * Fixed bug when reading in FRET efficiency histograms from BurstBrowser * TauFit: * Added option to set x-scale to log * Custom read-ins: * Bugfix to Leuven_PTU read-in routine * Sim: * Fixed FRET calculation in camera simulations * Added option to input concentration of particles (linked to particle number and box size) * ParticleDetection: * Added frame-wise particle tracking
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